IL_6N9F_018

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6N9F|1|1A|G|848, 6N9F|1|1A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0821

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6N9F|1|1A|G|721
6N9F|1|1A|A|722
6N9F|1|1A|A|723
6N9F|1|1A|A|724
6N9F|1|1A|C|725
*
6N9F|1|1A|G|846
6N9F|1|1A|A|847
6N9F|1|1A|G|848
6N9F|1|1A|A|849
6N9F|1|1A|U|850
6N9F|1|1A|A|851
6N9F|1|1A|G|852
6N9F|1|1A|C|853

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S Ribosomal Protein L4

Chain 1P

50S Ribosomal Protein L15