IL_6N9F_021

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_021 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0944

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6N9F|1|1A|U|750
6N9F|1|1A|G|751
6N9F|1|1A|A|752
6N9F|1|1A|A|753
6N9F|1|1A|G|754
*
6N9F|1|1A|U|771
6N9F|1|1A|G|772
6N9F|1|1A|G|773
6N9F|1|1A|A|774
6N9F|1|1A|G|775

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S Ribosomal Protein L2