3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
CUAG*CGAAG
Length
9 nucleotides
Bulged bases
6N9F|1|1A|A|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_055 not in the Motif Atlas
Homologous match to IL_7RQB_057
Geometric discrepancy: 0.116
The information below is about IL_7RQB_057
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_04059.1
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6N9F|1|1A|C|1483
6N9F|1|1A|U|1484
6N9F|1|1A|A|1485
6N9F|1|1A|G|1486
*
6N9F|1|1A|C|1598
6N9F|1|1A|G|1599
6N9F|1|1A|A|1600
6N9F|1|1A|A|1601
6N9F|1|1A|G|1602

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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