IL_6N9F_061

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6N9F|1|1A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_061 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1109

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6N9F|1|1A|G|1572
6N9F|1|1A|G|1573
6N9F|1|1A|A|1574
6N9F|1|1A|A|1575
6N9F|1|1A|G|1576
*
6N9F|1|1A|U|1587
6N9F|1|1A|G|1588
6N9F|1|1A|A|1589
6N9F|1|1A|C|1590
6N9F|1|1A|A|1591
6N9F|1|1A|A|1592
6N9F|1|1A|C|1593

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains