IL_6N9F_083

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6N9F|1|1A|G|2138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_083 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2637

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6N9F|1|1A|G|2132
6N9F|1|1A|C|2133
6N9F|1|1A|G|2134
6N9F|1|1A|U|2135
6N9F|1|1A|A|2136
6N9F|1|1A|G|2137
6N9F|1|1A|G|2138
6N9F|1|1A|A|2139
6N9F|1|1A|U|2140
6N9F|1|1A|A|2141
6N9F|1|1A|G|2142
*
6N9F|1|1A|C|2200
6N9F|1|1A|C|2201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains