IL_6N9F_084

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3237

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6N9F|1|1A|G|2146
6N9F|1|1A|G|2147
6N9F|1|1A|A|2148
6N9F|1|1A|G|2149
*
6N9F|1|1A|C|2183
6N9F|1|1A|G|2184
6N9F|1|1A|C|2185
6N9F|1|1A|C|2186
6N9F|1|1A|G|2187
6N9F|1|1A|G|2188
6N9F|1|1A|U|2189
6N9F|1|1A|G|2190
6N9F|1|1A|A|2191
6N9F|1|1A|A|2192
6N9F|1|1A|A|2193
6N9F|1|1A|U|2194
6N9F|1|1A|A|2195
6N9F|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains