3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
6N9F|1|1a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_143 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1028
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

6N9F|1|1a|G|683
6N9F|1|1a|A|684
6N9F|1|1a|G|685
6N9F|1|1a|U|686
6N9F|1|1a|A|687
6N9F|1|1a|G|688
*
6N9F|1|1a|C|699
6N9F|1|1a|G|700
6N9F|1|1a|C|701
6N9F|1|1a|A|702
6N9F|1|1a|G|703
6N9F|1|1a|A|704
6N9F|1|1a|U|705
6N9F|1|1a|A|706
6N9F|1|1a|C|707

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1k
30S ribosomal protein S11
Chain 1r
30S ribosomal protein S18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1507 s