IL_6N9F_153

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_153 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.1492

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6N9F|1|1a|G|1050
6N9F|1|1a|C|1051
6N9F|1|1a|U|1052
*
6N9F|1|1a|G|1206
6N9F|1|1a|2MG|1207
6N9F|1|1a|C|1208

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S Ribosomal Protein S3

Chain 1n

30S ribosomal protein S14 type Z