IL_6N9F_181

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

6N9F|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_181 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5452

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

6N9F|1|2A|C|272|||J
6N9F|1|2A|G|274
6N9F|1|2A|G|275
6N9F|1|2A|A|276
6N9F|1|2A|C|277
6N9F|1|2A|A|278
6N9F|1|2A|C|279
*
6N9F|1|2A|G|361
6N9F|1|2A|U|362
6N9F|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains