IL_6N9F_192

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_192 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1044

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6N9F|1|2A|U|703
6N9F|1|2A|G|704
6N9F|1|2A|A|705
6N9F|1|2A|A|706
6N9F|1|2A|G|707
*
6N9F|1|2A|U|724
6N9F|1|2A|G|725
6N9F|1|2A|G|726
6N9F|1|2A|A|727
6N9F|1|2A|G|728

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S Ribosomal Protein L2