IL_6N9F_222

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6N9F|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_222 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.1273

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6N9F|1|2A|C|1417
6N9F|1|2A|G|1418
6N9F|1|2A|A|1419
6N9F|1|2A|U|1420
6N9F|1|2A|G|1421
*
6N9F|1|2A|C|1577
6N9F|1|2A|U|1578
6N9F|1|2A|A|1579
6N9F|1|2A|A|1580
6N9F|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains