IL_6N9F_234

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6N9F|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_234 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.1169

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6N9F|1|2A|A|1669
6N9F|1|2A|C|1670
6N9F|1|2A|U|1671
6N9F|1|2A|C|1672
6N9F|1|2A|U|1673
6N9F|1|2A|G|1674
*
6N9F|1|2A|C|1990
6N9F|1|2A|U|1991
6N9F|1|2A|G|1992
6N9F|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S Ribosomal Protein L3

Chain 2O

50S Ribosomal Protein L14