3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
ACUCUG*CUGU
Length
10 nucleotides
Bulged bases
6N9F|1|2A|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_234 not in the Motif Atlas
Geometric match to IL_7A0S_062
Geometric discrepancy: 0.1169
The information below is about IL_7A0S_062
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6N9F|1|2A|A|1669
6N9F|1|2A|C|1670
6N9F|1|2A|U|1671
6N9F|1|2A|C|1672
6N9F|1|2A|U|1673
6N9F|1|2A|G|1674
*
6N9F|1|2A|C|1990
6N9F|1|2A|U|1991
6N9F|1|2A|G|1992
6N9F|1|2A|U|1993

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2E
50S Ribosomal Protein L3
Chain 2O
50S Ribosomal Protein L14

Coloring options:


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