IL_6N9F_241

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_241 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1408

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6N9F|1|2A|U|1851
6N9F|1|2A|C|1852
6N9F|1|2A|A|1853
6N9F|1|2A|A|1854
6N9F|1|2A|G|1855
*
6N9F|1|2A|C|1887
6N9F|1|2A|G|1888
6N9F|1|2A|A|1889
6N9F|1|2A|A|1890
6N9F|1|2A|G|1891

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28