IL_6N9F_266

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6N9F|1|2A|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_266 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.146

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6N9F|1|2A|U|2522
6N9F|1|2A|G|2523
*
6N9F|1|2A|C|2540
6N9F|1|2A|A|2541
6N9F|1|2A|A|2542
6N9F|1|2A|G|2543

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S Ribosomal Protein L36

Chain 2N

50S Ribosomal Protein L13