IL_6N9F_271

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_271 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.109

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6N9F|1|2A|C|2680
6N9F|1|2A|C|2681
6N9F|1|2A|U|2682
6N9F|1|2A|C|2683
6N9F|1|2A|U|2684
*
6N9F|1|2A|A|2725
6N9F|1|2A|U|2726
6N9F|1|2A|G|2727

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S Ribosomal Protein L3

Chain 2O

50S Ribosomal Protein L14

Chain 2T

50S Ribosomal Protein L19