IL_6N9F_281
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9F_281 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1175
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6N9F|1|2B|U|34
6N9F|1|2B|U|35
6N9F|1|2B|C|36
6N9F|1|2B|C|37
6N9F|1|2B|C|38
*
6N9F|1|2B|G|44
6N9F|1|2B|A|45
6N9F|1|2B|A|46
6N9F|1|2B|C|47
6N9F|1|2B|A|48
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 24
- 50S ribosomal protein L31
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S Ribosomal Protein L5
- Chain 2S
- 50S Ribosomal Protein L18
Coloring options: