3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N9F_329 not in the Motif Atlas
Geometric match to IL_6CZR_157
Geometric discrepancy: 0.14
The information below is about IL_6CZR_157
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_08069.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

6N9F|1|2a|G|1061
6N9F|1|2a|U|1062
6N9F|1|2a|C|1063
*
6N9F|1|2a|G|1193
6N9F|1|2a|U|1194
6N9F|1|2a|C|1195

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2c
30S Ribosomal Protein S3
Chain 2e
30S Ribosomal Protein S5
Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


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