IL_6N9F_357
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGU*AUACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9F_357 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3878
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
6N9F|1|1a|C|596
6N9F|1|1a|G|597
6N9F|1|1a|U|598
*
6N9F|1|1a|A|640
6N9F|1|1a|U|641
6N9F|1|1a|A|642
6N9F|1|1a|C|643
6N9F|1|1a|G|644
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1h
- 30S Ribosomal Protein S8
- Chain 1q
- 30S ribosomal protein S17
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