IL_6N9F_366

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6N9F|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N9F_366 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.129

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6N9F|1|2A|C|844
6N9F|1|2A|G|845
6N9F|1|2A|C|846
6N9F|1|2A|U|847
6N9F|1|2A|G|848
6N9F|1|2A|A|849
6N9F|1|2A|C|850
*
6N9F|1|2A|G|927
6N9F|1|2A|G|928
6N9F|1|2A|U|930
6N9F|1|2A|G|931
6N9F|1|2A|G|932
6N9F|1|2A|A|933
6N9F|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S Ribosomal Protein L15

Chain 23

50S ribosomal protein L30