IL_6N9F_380
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N9F_380 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.1067
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6N9F|1|2a|G|673
6N9F|1|2a|G|674
6N9F|1|2a|A|675
6N9F|1|2a|A|676
6N9F|1|2a|U|677
*
6N9F|1|2a|G|713
6N9F|1|2a|G|714
6N9F|1|2a|A|715
6N9F|1|2a|A|716
6N9F|1|2a|C|717
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2D
- 50S Ribosomal Protein L2
- Chain 2f
- 30S Ribosomal Protein S6
- Chain 2k
- 30S ribosomal protein S11
- Chain 2r
- 30S ribosomal protein S18
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