IL_6ND5_018

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6ND5|1|1A|G|801, 6ND5|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0443

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6ND5|1|1A|G|674
6ND5|1|1A|A|675
6ND5|1|1A|A|676
6ND5|1|1A|A|677
6ND5|1|1A|C|678
*
6ND5|1|1A|G|799
6ND5|1|1A|A|800
6ND5|1|1A|G|801
6ND5|1|1A|A|802
6ND5|1|1A|U|803
6ND5|1|1A|A|804
6ND5|1|1A|G|805
6ND5|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15