IL_6ND5_051

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6ND5|1|1A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_051 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0424

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6ND5|1|1A|C|1351
6ND5|1|1A|U|1352
6ND5|1|1A|A|1353
6ND5|1|1A|A|1354
6ND5|1|1A|G|1355
*
6ND5|1|1A|C|1376
6ND5|1|1A|G|1377
6ND5|1|1A|A|1378
6ND5|1|1A|A|1379
6ND5|1|1A|G|1380

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2