IL_6ND5_053

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

6ND5|1|1A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_053 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.0982

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6ND5|1|1A|U|1415
6ND5|1|1A|G|1416
*
6ND5|1|1A|C|1582
6ND5|1|1A|A|1583
6ND5|1|1A|C|1584
6ND5|1|1A|A|1586
6ND5|1|1A|A|1587

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains