3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAAG*UGACAAC
Length
12 nucleotides
Bulged bases
6ND5|1|1A|C|1543
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ND5_062 not in the Motif Atlas
Homologous match to IL_7RQB_063
Geometric discrepancy: 0.0835
The information below is about IL_7RQB_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02656.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6ND5|1|1A|G|1526
6ND5|1|1A|G|1527
6ND5|1|1A|A|1528
6ND5|1|1A|A|1528|||A
6ND5|1|1A|G|1529
*
6ND5|1|1A|U|1540
6ND5|1|1A|G|1541
6ND5|1|1A|A|1542
6ND5|1|1A|C|1543
6ND5|1|1A|A|1544
6ND5|1|1A|A|1545
6ND5|1|1A|C|1546

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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