IL_6ND5_084
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_084 not in the Motif Atlas
- Homologous match to IL_3U4M_002
- Geometric discrepancy: 0.2697
- The information below is about IL_3U4M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32056.1
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
6ND5|1|1A|G|2110
6ND5|1|1A|C|2111
6ND5|1|1A|G|2112
6ND5|1|1A|U|2113
6ND5|1|1A|A|2114
6ND5|1|1A|G|2115
6ND5|1|1A|G|2116
6ND5|1|1A|A|2117
6ND5|1|1A|U|2118
6ND5|1|1A|A|2119
6ND5|1|1A|G|2120
*
6ND5|1|1A|C|2178
6ND5|1|1A|C|2179
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
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