IL_6ND5_123
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGACAAC*GCUAAUCC
- Length
- 15 nucleotides
- Bulged bases
- 6ND5|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_123 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.3028
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ND5|1|1a|G|147
6ND5|1|1a|G|148
6ND5|1|1a|A|149
6ND5|1|1a|C|150
6ND5|1|1a|A|151
6ND5|1|1a|A|152
6ND5|1|1a|C|153
*
6ND5|1|1a|G|168
6ND5|1|1a|C|169
6ND5|1|1a|U|170
6ND5|1|1a|A|171
6ND5|1|1a|A|172
6ND5|1|1a|U|173
6ND5|1|1a|C|174
6ND5|1|1a|C|175
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
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