IL_6ND5_140
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_140 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2543
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6ND5|1|1a|U|605
6ND5|1|1a|G|606
6ND5|1|1a|A|607
6ND5|1|1a|A|608
6ND5|1|1a|A|609
6ND5|1|1a|G|610
6ND5|1|1a|A|611
6ND5|1|1a|C|612
*
6ND5|1|1a|G|628
6ND5|1|1a|G|629
6ND5|1|1a|G|630
6ND5|1|1a|G|631
6ND5|1|1a|A|632
6ND5|1|1a|G|633
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1h
- 30S ribosomal protein S8
- Chain 1p
- 30S ribosomal protein S16
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