IL_6ND5_184

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

6ND5|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_184 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.5447

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

6ND5|1|2A|C|272|||J
6ND5|1|2A|G|274
6ND5|1|2A|G|275
6ND5|1|2A|A|276
6ND5|1|2A|C|277
6ND5|1|2A|A|278
6ND5|1|2A|C|279
*
6ND5|1|2A|G|361
6ND5|1|2A|U|362
6ND5|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains