IL_6ND5_188

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6ND5|1|2A|U|504, 6ND5|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_188 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0522

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6ND5|1|2A|G|481
6ND5|1|2A|A|482
6ND5|1|2A|A|483
6ND5|1|2A|C|484
*
6ND5|1|2A|G|496
6ND5|1|2A|A|497
6ND5|1|2A|G|498
6ND5|1|2A|U|499
6ND5|1|2A|G|500
6ND5|1|2A|A|501
6ND5|1|2A|A|502
6ND5|1|2A|A|503
6ND5|1|2A|U|504
6ND5|1|2A|A|505
6ND5|1|2A|G|506
6ND5|1|2A|A|507
6ND5|1|2A|G|508
6ND5|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24