IL_6ND5_292

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6ND5|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND5_292 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6ND5|1|2a|G|148
6ND5|1|2a|A|149
6ND5|1|2a|C|150
6ND5|1|2a|A|151
6ND5|1|2a|A|152
6ND5|1|2a|C|153
*
6ND5|1|2a|G|168
6ND5|1|2a|C|169
6ND5|1|2a|U|170
6ND5|1|2a|A|171
6ND5|1|2a|A|172
6ND5|1|2a|U|173
6ND5|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20