3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ND5_312 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0862
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

6ND5|1|2a|G|673
6ND5|1|2a|G|674
6ND5|1|2a|A|675
6ND5|1|2a|A|676
6ND5|1|2a|U|677
6ND5|1|2a|U|678
*
6ND5|1|2a|A|712
6ND5|1|2a|G|713
6ND5|1|2a|G|714
6ND5|1|2a|A|715
6ND5|1|2a|A|716
6ND5|1|2a|C|717

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2f
30S ribosomal protein S6
Chain 2k
30S ribosomal protein S11
Chain 2r
30S ribosomal protein S18

Coloring options:


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