IL_6ND5_313
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6ND5|1|2a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_313 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.1143
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6ND5|1|2a|G|683
6ND5|1|2a|A|684
6ND5|1|2a|G|685
6ND5|1|2a|U|686
6ND5|1|2a|A|687
6ND5|1|2a|G|688
*
6ND5|1|2a|C|699
6ND5|1|2a|G|700
6ND5|1|2a|C|701
6ND5|1|2a|A|702
6ND5|1|2a|G|703
6ND5|1|2a|A|704
6ND5|1|2a|U|705
6ND5|1|2a|A|706
6ND5|1|2a|C|707
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2k
- 30S ribosomal protein S11
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