IL_6ND5_321
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUG*CCC
- Length
- 7 nucleotides
- Bulged bases
- 6ND5|1|2a|U|1049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND5_321 not in the Motif Atlas
- Geometric match to IL_4KQ0_003
- Geometric discrepancy: 0.212
- The information below is about IL_4KQ0_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6ND5|1|2a|G|1047
6ND5|1|2a|G|1048
6ND5|1|2a|U|1049
6ND5|1|2a|G|1050
*
6ND5|1|2a|C|1208
6ND5|1|2a|C|1209
6ND5|1|2a|C|1210
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2n
- 30S ribosomal protein S14 type Z
Coloring options: