IL_6ND6_132
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- GAAACC*GACUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ND6_132 not in the Motif Atlas
- Geometric match to IL_4LFB_019
- Geometric discrepancy: 0.1178
- The information below is about IL_4LFB_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31561.1
- Basepair signature
- cWW-L-R-tWH-tWH-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ND6|1|1a|G|450
6ND6|1|1a|A|451
6ND6|1|1a|A|452
6ND6|1|1a|A|453
6ND6|1|1a|C|454
6ND6|1|1a|C|455
*
6ND6|1|1a|G|476
6ND6|1|1a|A|477
6ND6|1|1a|C|479
6ND6|1|1a|U|480
6ND6|1|1a|G|481
6ND6|1|1a|A|482
6ND6|1|1a|C|483
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
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