IL_6ND6_359

3D structure

PDB id

6ND6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ND6_359 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3393

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6ND6|1|2A|C|1468
6ND6|1|2A|A|1469
6ND6|1|2A|G|1470
6ND6|1|2A|A|1471
6ND6|1|2A|A|1472
6ND6|1|2A|G|1473
*
6ND6|1|2A|U|1518
6ND6|1|2A|G|1519
6ND6|1|2A|G|1520
6ND6|1|2A|U|1523
6ND6|1|2A|G|1524

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains