IL_6NDK_051

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_051 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1231

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6NDK|1|QA|C|1303
6NDK|1|QA|G|1304
6NDK|1|QA|G|1305
6NDK|1|QA|A|1306
6NDK|1|QA|U|1307
6NDK|1|QA|U|1308
*
6NDK|1|QA|A|1329
6NDK|1|QA|U|1330
6NDK|1|QA|G|1331
6NDK|1|QA|A|1332
6NDK|1|QA|A|1333
6NDK|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx