IL_6NDK_065

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGGC*GUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_065 not in the Motif Atlas

Geometric match to IL_7A0S_102

Geometric discrepancy: 0.3787

The information below is about IL_7A0S_102

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform with intercalation

Motif group

IL_58502.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6NDK|1|RA|G|273|||D
6NDK|1|RA|G|273|||E
6NDK|1|RA|G|273|||F
6NDK|1|RA|C|273|||G
*
6NDK|1|RA|G|363|||E
6NDK|1|RA|U|363|||F
6NDK|1|RA|A|363|||G
6NDK|1|RA|C|364
6NDK|1|RA|C|365

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RI

50S ribosomal protein L9