IL_6NDK_101

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6NDK|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_101 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1037

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6NDK|1|RA|C|1208
6NDK|1|RA|G|1209
6NDK|1|RA|A|1210
6NDK|1|RA|U|1211
6NDK|1|RA|G|1212
6NDK|1|RA|A|1213
6NDK|1|RA|A|1214
6NDK|1|RA|G|1215
*
6NDK|1|RA|U|1234
6NDK|1|RA|G|1235
6NDK|1|RA|G|1236
6NDK|1|RA|A|1237
6NDK|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20