IL_6NDK_105

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6NDK|1|RA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_105 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1694

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6NDK|1|RA|G|1319
6NDK|1|RA|C|1320
6NDK|1|RA|A|1321
6NDK|1|RA|A|1322
6NDK|1|RA|U|1323
*
6NDK|1|RA|A|1331
6NDK|1|RA|G|1332
6NDK|1|RA|C|1333

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23