IL_6NDK_120

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_120 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.1449

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6NDK|1|RA|G|1666
6NDK|1|RA|G|1667
6NDK|1|RA|A|1668
6NDK|1|RA|A|1669
*
6NDK|1|RA|U|1993
6NDK|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14