IL_6NDK_124

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6NDK|1|RA|G|1801, 6NDK|1|RA|G|1816, 6NDK|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_124 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.105

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6NDK|1|RA|U|1798
6NDK|1|RA|G|1799
6NDK|1|RA|C|1800
6NDK|1|RA|G|1801
6NDK|1|RA|A|1802
6NDK|1|RA|A|1803
6NDK|1|RA|C|1804
*
6NDK|1|RA|G|1813
6NDK|1|RA|G|1814
6NDK|1|RA|A|1815
6NDK|1|RA|G|1816
6NDK|1|RA|G|1817
6NDK|1|RA|U|1818
6NDK|1|RA|A|1819
6NDK|1|RA|U|1820
6NDK|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2