IL_6NDK_139

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6NDK|1|RA|G|2116, 6NDK|1|RA|A|2117, 6NDK|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_139 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1297

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6NDK|1|RA|G|2110
6NDK|1|RA|C|2111
6NDK|1|RA|G|2112
6NDK|1|RA|U|2113
6NDK|1|RA|A|2114
6NDK|1|RA|G|2115
6NDK|1|RA|G|2116
6NDK|1|RA|A|2117
6NDK|1|RA|U|2118
6NDK|1|RA|A|2119
6NDK|1|RA|G|2120
*
6NDK|1|RA|C|2178
6NDK|1|RA|C|2179

Current chains

Chain RA

23S rRNA

Nearby chains