IL_6NDK_140

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

6NDK|1|RA|A|2169, 6NDK|1|RA|A|2170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_140 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.3147

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|RA|G|2124
6NDK|1|RA|G|2125
6NDK|1|RA|A|2126
6NDK|1|RA|G|2127
*
6NDK|1|RA|C|2161
6NDK|1|RA|G|2162
6NDK|1|RA|C|2163
6NDK|1|RA|C|2164
6NDK|1|RA|G|2165
6NDK|1|RA|G|2166
6NDK|1|RA|U|2167
6NDK|1|RA|G|2168
6NDK|1|RA|A|2169
6NDK|1|RA|A|2170
6NDK|1|RA|A|2171
6NDK|1|RA|U|2172
6NDK|1|RA|A|2173
6NDK|1|RA|C|2174

Current chains

Chain RA

23S rRNA

Nearby chains