IL_6NDK_149
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_149 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1717
- The information below is about IL_7A0S_087
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6NDK|1|RA|C|2466
6NDK|1|RA|C|2467
6NDK|1|RA|G|2468
6NDK|1|RA|A|2469
6NDK|1|RA|G|2470
*
6NDK|1|RA|C|2480
6NDK|1|RA|G|2481
6NDK|1|RA|G|2482
6NDK|1|RA|C|2483
6NDK|1|RA|G|2484
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R9
- 50S ribosomal protein L36
- Chain RQ
- 50S ribosomal protein L16
- Chain RZ
- 50S ribosomal protein L25
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