IL_6NDK_151

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6NDK|1|RA|G|2576, 6NDK|1|RA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_151 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1138

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6NDK|1|RA|C|2510
6NDK|1|RA|U|2511
6NDK|1|RA|C|2512
*
6NDK|1|RA|G|2574
6NDK|1|RA|C|2575
6NDK|1|RA|G|2576
6NDK|1|RA|A|2577
6NDK|1|RA|G|2578

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3