IL_6NDK_156

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6NDK|1|RA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_156 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1427

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6NDK|1|RA|U|2636
6NDK|1|RA|U|2637
6NDK|1|RA|G|2638
6NDK|1|RA|A|2639
6NDK|1|RA|G|2640
*
6NDK|1|RA|C|2774
6NDK|1|RA|A|2775
6NDK|1|RA|A|2776
6NDK|1|RA|G|2777
6NDK|1|RA|A|2778
6NDK|1|RA|U|2779
6NDK|1|RA|G|2780
6NDK|1|RA|A|2781
6NDK|1|RA|G|2782

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13