IL_6NDK_157

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_157 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1211

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6NDK|1|RA|C|2652
6NDK|1|RA|U|2653
6NDK|1|RA|A|2654
6NDK|1|RA|G|2655
6NDK|1|RA|U|2656
6NDK|1|RA|A|2657
6NDK|1|RA|C|2658
*
6NDK|1|RA|G|2663
6NDK|1|RA|G|2664
6NDK|1|RA|A|2665
6NDK|1|RA|C|2666
6NDK|1|RA|C|2667
6NDK|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6