IL_6NDK_177

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_177 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1431

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6NDK|1|XA|C|132
6NDK|1|XA|U|133
6NDK|1|XA|A|134
6NDK|1|XA|C|135
6NDK|1|XA|C|136
*
6NDK|1|XA|G|227
6NDK|1|XA|A|228
6NDK|1|XA|U|229
6NDK|1|XA|G|230

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20