IL_6NDK_178

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6NDK|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_178 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.2064

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6NDK|1|XA|G|148
6NDK|1|XA|A|149
6NDK|1|XA|C|150
6NDK|1|XA|A|151
6NDK|1|XA|A|152
6NDK|1|XA|C|153
*
6NDK|1|XA|G|168
6NDK|1|XA|C|169
6NDK|1|XA|U|170
6NDK|1|XA|A|171
6NDK|1|XA|A|172
6NDK|1|XA|U|173
6NDK|1|XA|C|174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20