IL_6NDK_180

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6NDK|1|XA|U|244, 6NDK|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_180 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.0968

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6NDK|1|XA|C|242
6NDK|1|XA|A|243
6NDK|1|XA|U|244
6NDK|1|XA|C|245
6NDK|1|XA|A|246
6NDK|1|XA|G|247
*
6NDK|1|XA|C|277
6NDK|1|XA|G|278
6NDK|1|XA|A|279
6NDK|1|XA|C|280
6NDK|1|XA|G|281
6NDK|1|XA|A|282
6NDK|1|XA|C|283
6NDK|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17